Specification of translation rules

Here is the detailed specification for the translation rules


Posttranslational modification


1.1 i-sti-i

SBGN-MLNewt SBGN-MLNewt

1.2 i-cat-i

SBGN-MLNewt SBGN-MLNewt

1.3 i-nsti-i

SBGN-MLNewt SBGN-MLNewt

1.4 i-mod-i

SBGN-MLNewt SBGN-MLNewt

1.5 i-inh-i

SBGN-MLNewt SBGN-MLNewt

1.6 i-sti-a

SBGN-MLNewt SBGN-MLNewt

1.7 i-cat-a

SBGN-MLNewt SBGN-MLNewt

1.8 i-nsti-a

SBGN-MLNewt SBGN-MLNewt

1.9 i-mod-a

SBGN-MLNewt SBGN-MLNewt

1.10 i-inh-a

SBGN-MLNewt SBGN-MLNewt

1.11 a-sti-i

SBGN-MLNewt SBGN-MLNewt

1.12 a-cat-i

SBGN-MLNewt SBGN-MLNewt

11.13 a-nsti-i

SBGN-MLNewt SBGN-MLNewt

1.14 a-mod-i

SBGN-MLNewt SBGN-MLNewt

1.15 a-inh-i

SBGN-MLNewt SBGN-MLNewt

1.16 a-sti-a

SBGN-MLNewt SBGN-MLNewt

1.17 a-cat-a

SBGN-MLNewt SBGN-MLNewt

1.18 a-nsti-a

SBGN-MLNewt SBGN-MLNewt

1.19 a-mod-a

SBGN-MLNewt SBGN-MLNewt

1.20 a-inh-a

SBGN-MLNewt SBGN-MLNewt



Metabolic reactions


1.21 m-sti-m

SBGN-MLNewt SBGN-MLNewt

1.22 m-cat-m

SBGN-MLNewt SBGN-MLNewt

1.23 m-nsti-m

SBGN-MLNewt SBGN-MLNewt

1.24 m-mod-m

SBGN-MLNewt SBGN-MLNewt

1.25 m-inh-m

SBGN-MLNewt SBGN-MLNewt

1.26 aiaimm-cat-aiiamm


1.27 a-catr-a

SBGN-MLNewt SBGN-MLNewt

1.28 a-catr-i

SBGN-MLNewt SBGN-MLNewt

1.29 i-inhr-a

SBGN-MLNewt SBGN-MLNewt

1.30 m-catr-m

SBGN-MLNewt SBGN-MLNewt

1.31 m-inhr-m

SBGN-MLNewt SBGN-MLNewt

1.32 logical gates


1.33 logical gates or




Source And Sinks


2.1 ss-sti-i

SBGN-MLNewt SBGN-MLNewt

2.2 i-sti-ss

SBGN-MLNewt SBGN-MLNewt

2.3 a-cat-ss

SBGN-MLNewt SBGN-MLNewt

2.4 a-inh-ss

SBGN-MLNewt SBGN-MLNewt



Oligomerization


3.1 Dimerization x2

SBGN-MLNewt SBGN-MLNewt

3.2 Oligomerization x3

SBGN-MLNewt SBGN-MLNewt

3.3 Oligomerization x4

SBGN-MLNewt SBGN-MLNewt

3.4 Oligomerization x5

SBGN-MLNewt SBGN-MLNewt

3.5 Oligomerization x6

SBGN-MLNewt SBGN-MLNewt

3.6 Oligomerization x7

SBGN-MLNewt SBGN-MLNewt

3.7 Oligomerization x8

SBGN-MLNewt SBGN-MLNewt

3.8 Oligomerization x9

SBGN-MLNewt SBGN-MLNewt

3.9 Oligomerization x10

SBGN-MLNewt SBGN-MLNewt

3.10 Multimerization 1

SBGN-MLNewt SBGN-MLNewt

3.11 Multimerization 2

SBGN-MLNewt SBGN-MLNewt

3.12 Oligomerization x6 r

SBGN-MLNewt SBGN-MLNewt



Translocation


4.1 Translocation 1

SBGN-MLNewt SBGN-MLNewt

4.2 Translocation 2

SBGN-MLNewt SBGN-MLNewt



Complexes


5.1 Complex association with complex name

SBGN-MLNewt SBGN-MLNewt

5.2 Complex association

SBGN-MLNewt SBGN-MLNewt

5.3 Complex association regulated

SBGN-MLNewt SBGN-MLNewt

5.4 Complex dissociation

SBGN-MLNewt SBGN-MLNewt



Hidden Inhibition


6.1 Hidden inhibition 1

SBGN-MLNewt SBGN-MLNewt

6.2 Hidden inhibition 2

SBGN-MLNewt SBGN-MLNewt



Patterns



Simple Schemes


8.1 raf-mek-erk

SBGN-MLNewt SBGN-MLNewt

8.2 Elk signalling




New Schemes


9.1 Currency metabolites 1

SBGN-MLNewt SBGN-MLNewt

9.2 Noncurrency metabolites 1

SBGN-MLNewt SBGN-MLNewt

9.3 Regulation combining 1

SBGN-MLNewt SBGN-MLNewt



Metabolism Regulation Maps


10.1 MR001-glycolysis


10.2 MR002-glycolysis-alt


10.3 MR003-eicosanoids


10.4 MR004-mevalonate


10.5 MR007-inos