Translation rules

• Red: Actionable, TODOs, changes for the next version of the Doc
• Blue: To move to the website
• Green: Done, moved to the website
• Brown: Changes to the text, knowledge file to be updated with this selected fragment

#f

How To Treat Metabolic Pathways

Metabolic stimulation

#001

SBGN-ML  Newt	SBGN-ML  Newt
Macromolecule A stimulates reaction B to C

Metabolic inhibition

#002

SBGN-ML  Newt	SBGN-ML  Newt
Macromolecule A inhibits reaction B to C

How To Treat Stimulation In Signalling Pathways

Stimulation with inactive reactants

#003

SBGN-ML  Newt	SBGN-ML  Newt
A stimulates modification of macromolecule B
IMPORTANT: not obvious rule and potentially wrong translation

Stimulation with active substrate

#004

SBGN-ML  Newt	SBGN-ML  Newt
A stimulates modification of macromolecule B, where substrate of reaction is active

Stimulation with active product

#005

SBGN-ML  Newt	SBGN-ML  Newt
A stimulates modification of macromolecule B, where product of reaction is active

Stimulation with active substrate and product

#006

SBGN-ML  Newt	SBGN-ML  Newt
A stimulates modification of macromolecule B, where both reactant are active

Translocation

Simple translocation

#007

SBGN-ML  Newt	SBGN-ML  Newt
A stimulates translocation of B, from compartment C1 to compartment C2